Gene: Sopen08g028870

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen08g028870
  • Transcript Identifier Sopen08g028870.1
  • Gene Type Coding gene
  • Location Spenn-ch08 : 68353340-68354986 : positive

Gene Family Information

  • ID HOM05D000032
  • #Genes/#Species 5307/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen08g028870.1

Descriptions

  • Description Encodes a DEAD-box RNA helicase that localizes to mitochondria and is essential for regulating cell-to-cell transport via plasmodesmata. | embryo defective 1586 (EMB1586) | FUNCTIONS IN: RNA helicase activity | INVOLVED IN: plasmodesma organization, plasmodesmata-mediated intercellular transport, embryo development ending in seed dormancy | LOCATED IN: mitochondrion | EXPRESSED IN: embryo, root, flower, shoot meristem | CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif , DNA/RNA helicase, DEAD/DEAH box type, N-terminal , DEAD-like helicase, N-terminal , DNA/RNA helicase, C-terminal , Helicase, superfamily 1/2, ATP-binding domain | BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009663
ISO
PLAZA Integrative Orthologyplasmodesma organization AT1G12770
GO:0010497
ISO
PLAZA Integrative Orthologyplasmodesmata-mediated intercellular transport AT1G12770

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0005524
IEA
InterProATP binding
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT1G12770

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005739
ISO
PLAZA Integrative Orthologymitochondrion AT1G12770

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR001650 Helicase, C-terminal
IPR011545 DEAD/DEAH box helicase domain
IPR027417 P-loop containing nucleoside triphosphate hydrolase
Mapman id Description
35.1 not assigned.annotated