Gene: Sopen08g022770

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen08g022770
  • Transcript Identifier Sopen08g022770.1
  • Gene Type Coding gene
  • Location Spenn-ch08 : 62268234-62270732 : positive

Gene Family Information

  • ID HOM05D002682
  • #Genes/#Species 256/93
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen08g022770.1

Descriptions

  • Description RNA recognition motif and CCHC-type zinc finger domains containing protein | FUNCTIONS IN: zinc ion binding, nucleotide binding, nucleic acid binding | INVOLVED IN: RNA splicing | LOCATED IN: nucleolus | EXPRESSED IN: 25 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait , Zinc finger, CCHC-type | BEST Arabidopsis thaliana protein match is: serine/arginine-rich 22
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
ISO
PLAZA Integrative OrthologymRNA splicing, via spliceosome AT1G23860

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0008270
IEA
InterProzinc ion binding
GO:0042802
ISO
PLAZA Integrative Orthologyidentical protein binding AT1G23860
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G23860
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT1G23860

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G23860
GO:0016607
ISO
PLAZA Integrative Orthologynuclear speck AT1G23860

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036875 Zinc finger, CCHC-type superfamily
IPR000504 RNA recognition motif domain
IPR001878 Zinc finger, CCHC-type
IPR035979 RNA-binding domain superfamily
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
Mapman id Description
16.2.6.4 RNA processing.pre-mRNA splicing.spliceosome-associated non-snRNP factor activities.splicing factor (RSZ21/22)