Gene: Sopen08g005750

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen08g005750
  • Transcript Identifier Sopen08g005750.1
  • Gene Type Coding gene
  • Location Spenn-ch08 : 5679942-5684329 : positive

Gene Family Information

  • ID HOM05D001480
  • #Genes/#Species 429/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen08g005750.1

Descriptions

  • Description RNA-binding protein | FUNCTIONS IN: RNA binding, nucleic acid binding | INVOLVED IN: RNA processing | LOCATED IN: ribonucleoprotein complex, nucleus, chloroplast | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding , RNA-binding protein Lupus La , Lupus La protein | BEST Arabidopsis thaliana protein match is: RNA-binding protein
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006396
IEA
InterProRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
InterProRNA binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT2G43970

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
InterPronucleus
GO:1990904
IEA
InterProribonucleoprotein complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036388 Winged helix-like DNA-binding domain superfamily
IPR006630 La-type HTH domain
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR036390 Winged helix DNA-binding domain superfamily
IPR002344 Lupus La protein
IPR035979 RNA-binding domain superfamily
IPR034878 Plant La-related protein, RNA recognition motif
Mapman id Description
35.1 not assigned.annotated