Gene: Sopen07g031620

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen07g031620
  • Transcript Identifier Sopen07g031620.1
  • Gene Type Coding gene
  • Location Spenn-ch07 : 77014342-77016959 : positive

Gene Family Information

  • ID HOM05D000461
  • #Genes/#Species 1145/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen07g031620.1

Descriptions

  • Description Encodes a homolog of human Lysine-Specific Demethylase1. Involved in H3K4 methylation of target genes including the flowering loci FLC and FWA. | LSD1-like2 (LDL2) | CONTAINS InterPro DOMAIN/s: Amine oxidase , SWIRM | BEST Arabidopsis thaliana protein match is: LSD1-like 1
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0051568
ISO
PLAZA Integrative Orthologyhistone H3-K4 methylation AT3G13682

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016491
IEA
InterProoxidoreductase activity
GO:0005515
IEA
InterProprotein binding

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002937 Amine oxidase
IPR036188 FAD/NAD(P)-binding domain superfamily
IPR036388 Winged helix-like DNA-binding domain superfamily
IPR007526 SWIRM domain
IPR009057 Homeobox-like domain superfamily
Mapman id Description
12.3.3.7.1 Chromatin organisation.post-translational histone modification.histone lysine methylation.AOD group histone demethylase activities.lysine-specific demethylase (LDL/KDM1)