Gene: Sopen07g004420

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen07g004420
  • Transcript Identifier Sopen07g004420.1
  • Gene Type Coding gene
  • Location Spenn-ch07 : 3739687-3745296 : negative

Gene Family Information

  • ID HOM05D001376
  • #Genes/#Species 455/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen07g004420.1

Descriptions

  • Description Encodes a novel Arabidopsis gene encoding a polypeptide with K-homology (KH) RNA-binding modules, which acts on vegetative growth and pistil development. Genetic studies suggest that PEP interacts with element(s) of the CLAVATA signaling pathway. | PEPPER (PEP) | FUNCTIONS IN: RNA binding, nucleic acid binding | INVOLVED IN: shoot development, gynoecium development | LOCATED IN: cellular_component unknown | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup , K Homology , K Homology, type 1 | BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009299
ISO
PLAZA Integrative OrthologymRNA transcription AT4G26000
GO:0048467
ISO
PLAZA Integrative Orthologygynoecium development AT4G26000
GO:0048577
ISO
PLAZA Integrative Orthologynegative regulation of short-day photoperiodism, flowering AT4G26000
GO:0048367
ISO
PLAZA Integrative Orthologyshoot system development AT4G26000
GO:0006396
ISO
PLAZA Integrative OrthologyRNA processing AT4G26000
GO:0048579
ISO
PLAZA Integrative Orthologynegative regulation of long-day photoperiodism, flowering AT4G26000

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
InterProRNA binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT4G26000

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT4G26000

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036612 K Homology domain, type 1 superfamily
IPR004088 K Homology domain, type 1
IPR004087 K Homology domain
Mapman id Description
35.1 not assigned.annotated