Gene: Sopen06g033410

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen06g033410
  • Transcript Identifier Sopen06g033410.1
  • Gene Type Coding gene
  • Location Spenn-ch06 : 58874810-58876876 : positive

Gene Family Information

  • ID HOM05D000377
  • #Genes/#Species 1292/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen06g033410.1

Descriptions

  • Description zinc finger (CCCH-type) family protein | FUNCTIONS IN: sequence-specific DNA binding transcription factor activity | INVOLVED IN: regulation of transcription | LOCATED IN: endomembrane system | EXPRESSED IN: 17 plant structures | EXPRESSED DURING: 7 growth stages | CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type , Ankyrin repeat-containing domain , Ankyrin repeat | BEST Arabidopsis thaliana protein match is: zinc finger (CCCH-type) family protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006355
ISO
PLAZA Integrative Orthologyregulation of transcription, DNA-templated AT5G58620
GO:0006412
ISO
PLAZA Integrative Orthologytranslation AT5G58620

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0046872
IEA
InterPrometal ion binding
GO:0003723
ISO
PLAZA Integrative OrthologyRNA binding AT5G58620

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010494
ISO
PLAZA Integrative Orthologycytoplasmic stress granule AT5G58620
GO:0000932
ISO
PLAZA Integrative OrthologyP-body AT5G58620

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002110 Ankyrin repeat
IPR036770 Ankyrin repeat-containing domain superfamily
IPR000571 Zinc finger, CCCH-type
IPR020683 Ankyrin repeat-containing domain
Mapman id Description
16.8.2 RNA processing.mRNA sequestration.mRNA-binding regulatory factor (TZF)