Gene: Sopen06g030530
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen06g030530
- Transcript Identifier Sopen06g030530.1
- Gene Type Coding gene
- Location Spenn-ch06 : 56595929-56598300 : negative
Gene Family Information
- ID HOM05D000978
- #Genes/#Species 614/95
- Phylogenetic origin
- ID ORTHO05D000813
- #Genes/#Species 601/95
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid Sopen06g030530.1
Descriptions
- Description Encodes a nuclear-localized transcriptional activator with weak sequence similarity to basic helix-loop-helix(bHLH)-domain proteins. It promotes the production of stele cells in root meristems and is required to establish and maintain the normal vascular cell number and pattern in primary and lateral roots. | LONESOME HIGHWAY (LHW) | CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain | BEST Arabidopsis thaliana protein match is: Serine/threonine-protein kinase WNK (With No Lysine)-related
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006355 | IEA | InterPro | regulation of transcription, DNA-templated | |
| GO:0048364 | ISO | PLAZA Integrative Orthology | root development | AT2G27230 |
| GO:0045893 | ISO | PLAZA Integrative Orthology | positive regulation of transcription, DNA-templated | AT2G27230 |
| GO:0010479 | ISO | PLAZA Integrative Orthology | stele development | AT2G27230 |
| GO:0010078 | ISO | PLAZA Integrative Orthology | maintenance of root meristem identity | AT2G27230 |
| GO:0010089 | ISO | PLAZA Integrative Orthology | xylem development | AT2G27230 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003700 | IEA | InterPro | DNA-binding transcription factor activity | |
| GO:0042803 | ISO | PLAZA Integrative Orthology | protein homodimerization activity | AT2G27230 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT2G27230 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR043561 | Transcription factor LHW-like |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |