Gene: Sopen06g029140

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen06g029140
  • Transcript Identifier Sopen06g029140.1
  • Gene Type Coding gene
  • Location Spenn-ch06 : 55597850-55599350 : negative

Gene Family Information

  • ID HOM05D001378
  • #Genes/#Species 454/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen06g029140.1

Descriptions

  • Description Syntaxin-related protein required for vacuolar assembly. A member of t-SNARE superfamily, homologous to yest Vam3p. Localized in the vacuolar membranes. The protein has a heptad repeat structure (residues164ñ220) in which hydrophobic amino acid residues appear at seven amino acid intervals. Such regions have a high potential to form an amphiphilic a-helix, intriguing for the intermolecular interactions by forming coiled-coil structure. AtVam3p has a highly hydrophobic segment at its C terminus thus implicating it to be a membrane protein while the rest of the sequence is hydrophilic. | VACUOLAR MORPHOLOGY 3 (VAM3) | FUNCTIONS IN: SNAP receptor activity | INVOLVED IN: in 7 processes | LOCATED IN: late endosome, trans-Golgi network transport vesicle, plant-type vacuole membrane, vacuole, plant-type vacuole | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain , t-SNARE , Syntaxin/epimorphin, conserved site , Syntaxin, N-terminal | BEST Arabidopsis thaliana protein match is: syntaxin of plants 23
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016192
IEA
InterProvesicle-mediated transport
GO:0061025
ISO
PLAZA Integrative Orthologymembrane fusion AT5G16830
GO:0045324
ISO
PLAZA Integrative Orthologylate endosome to vacuole transport AT5G16830
GO:0006886
ISO
PLAZA Integrative Orthologyintracellular protein transport AT5G16830
GO:0006623
ISO
PLAZA Integrative Orthologyprotein targeting to vacuole AT5G16830
GO:0006896
ISO
PLAZA Integrative OrthologyGolgi to vacuole transport AT5G16830

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G16830
GO:0005484
ISO
PLAZA Integrative OrthologySNAP receptor activity AT5G16830

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016020
IEA
InterPromembrane
GO:0030140
ISO
PLAZA Integrative Orthologytrans-Golgi network transport vesicle AT5G16830
GO:0005770
ISO
PLAZA Integrative Orthologylate endosome AT5G16830

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR006011 Syntaxin, N-terminal domain
IPR000727 Target SNARE coiled-coil homology domain
IPR010989 SNARE
Mapman id Description
22.3.5.1.1.2 Vesicle trafficking.post-Golgi trafficking.target membrane fusion.membrane fusion complexes.Qa-type SNARE components.SYP2-group component