Gene: Sopen06g022170
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen06g022170
- Transcript Identifier Sopen06g022170.1
- Gene Type Coding gene
- Location Spenn-ch06 : 49821580-49825210 : negative
Gene Family Information
- ID HOM05D001215
- #Genes/#Species 514/98
- Phylogenetic origin
- ID ORTHO05D001387
- #Genes/#Species 418/98
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- tid Sopen06g022170.1
Descriptions
- Description This gene is predicted to encode a nucleosome assembly protein. Plant lines expressing an RNAi construct directed against this gene show a reduction in agrobacterium-mediated root transformation. | nucleosome assembly protein 1, 2 (NAP1, 2) | CONTAINS InterPro DOMAIN/s: Nucleosome assembly protein (NAP) | BEST Arabidopsis thaliana protein match is: nucleosome assembly protein 1, 3 ., Nucleosome assembly protein (NAP)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006334 | IEA | InterPro | nucleosome assembly | |
| GO:0000724 | ISO | PLAZA Integrative Orthology | double-strand break repair via homologous recombination | AT3G13782 |
| GO:0006289 | ISO | PLAZA Integrative Orthology | nucleotide-excision repair | AT3G13782 |
| GO:0046686 | ISO | PLAZA Integrative Orthology | response to cadmium ion | AT3G13782 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT3G13782 |
| GO:0042393 | ISO | PLAZA Integrative Orthology | histone binding | AT3G13782 |
| GO:0003682 | ISO | PLAZA Integrative Orthology | chromatin binding | AT3G13782 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | InterPro | nucleus | |
| GO:0005737 | ISO | PLAZA Integrative Orthology | cytoplasm | AT3G13782 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 12.2.6 | Chromatin organisation.histone chaperone activities.histone chaperone (NAP) |