Gene: Sopen06g015410
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen06g015410
- Transcript Identifier Sopen06g015410.1
- Gene Type Coding gene
- Location Spenn-ch06 : 39890226-39891549 : positive
Gene Family Information
- ID HOM05D000114
- #Genes/#Species 2914/98
- Phylogenetic origin
- ID ORTHO05D000075
- #Genes/#Species 2458/97
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid Sopen06g015410.1
Descriptions
- Description member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. | expansin A8 (EXPA8) | INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, syncytium formation, unidimensional cell growth, plant-type cell wall loosening | LOCATED IN: endomembrane system, extracellular region | EXPRESSED IN: 21 plant structures | EXPRESSED DURING: 10 growth stages | CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal , Rare lipoprotein A , Pollen allergen/expansin, C-terminal , Barwin-related endoglucanase , Expansin , Expansin/Lol pI , Expansin 45, endoglucanase-like | BEST Arabidopsis thaliana protein match is: expansin A2
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009664 | IEA | InterPro | plant-type cell wall organization | |
| GO:0006949 | ISO | PLAZA Integrative Orthology | syncytium formation | AT2G40610 |
| GO:0009831 | ISO | PLAZA Integrative Orthology | plant-type cell wall modification involved in multidimensional cell growth | AT5G05290 |
| GO:0009635 | ISO | PLAZA Integrative Orthology | response to herbicide | AT2G40610 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005576 | IEA | InterPro | extracellular region |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR009009 | RlpA-like protein, double-psi beta-barrel domain |
| IPR036908 | RlpA-like domain superfamily |
| IPR002963 | Expansin |
| IPR007118 | Expansin/Lol pI |
| IPR007117 | Expansin, cellulose-binding-like domain |
| IPR036749 | Expansin, cellulose-binding-like domain superfamily |
| IPR007112 | Expansin/pollen allergen, DPBB domain |
| Mapman id | Description |
|---|---|
| 21.4.2.1 | Cell wall organisation.cell wall proteins.expansin activities.alpha-class expansin |