Gene: Sopen06g004560

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen06g004560
  • Transcript Identifier Sopen06g004560.1
  • Gene Type Coding gene
  • Location Spenn-ch06 : 4232247-4232696 : positive

Gene Family Information

  • ID HOM05D000212
  • #Genes/#Species 1878/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen06g004560.1

Descriptions

  • Description one of 20 SKP1 homologs in Arabidopsis. Protein is most similar to ASK12 and RNAi lines show defects in stamen development. | SKP1-like 11 (SK11) | FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding | INVOLVED IN: ubiquitin-dependent protein catabolic process | LOCATED IN: endomembrane system | EXPRESSED IN: 13 plant structures | CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase, SCF complex, Skp subunit , SKP1 component, dimerisation , SKP1 component , BTB/POZ fold , SKP1 component, POZ | BEST Arabidopsis thaliana protein match is: SKP1-like 12
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006511
IEA
InterProubiquitin-dependent protein catabolic process

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR016072 SKP1 component, dimerisation
IPR011333 SKP1/BTB/POZ domain superfamily
IPR016897 S-phase kinase-associated protein 1
IPR001232 S-phase kinase-associated protein 1-like
IPR036296 SKP1-like, dimerisation domain superfamily
IPR016073 SKP1 component, POZ domain
Mapman id Description
19.2.2.8.1.2 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.Cullin-based ubiquitylation complexes.SKP1-CUL1-FBX (SCF) E3 ubiquitin ligase complexes.target protein binding component SKP1/ASK1