Gene: Sopen05g032250

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen05g032250
  • Transcript Identifier Sopen05g032250.1
  • Gene Type Coding gene
  • Location Spenn-ch05 : 75765398-75766907 : positive

Gene Family Information

  • ID HOM05D000142
  • #Genes/#Species 2580/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen05g032250.1

Descriptions

  • Description Encodes a glycine-rich RNA-binding protein. Gene expression is induced by cold. | GLYCINE-RICH RNA-BINDING PROTEIN 2 (ATGRP2) | FUNCTIONS IN: double-stranded DNA binding, RNA binding, single-stranded DNA binding, copper ion binding, ATP binding | INVOLVED IN: response to cold, seed germination, response to osmotic stress | LOCATED IN: mitochondrion | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein , RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: glycine-rich RNA-binding protein 4
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009409
ISO
PLAZA Integrative Orthologyresponse to cold AT4G13850
GO:0009414
ISO
PLAZA Integrative Orthologyresponse to water deprivation AT4G13850
GO:0060567
ISO
PLAZA Integrative Orthologynegative regulation of DNA-templated transcription, termination AT4G13850
GO:1900864
ISO
PLAZA Integrative Orthologymitochondrial RNA modification AT3G23830
GO:0009845
ISO
PLAZA Integrative Orthologyseed germination AT4G13850
GO:0009631
ISO
PLAZA Integrative Orthologycold acclimation AT4G13850
GO:0006970
ISO
PLAZA Integrative Orthologyresponse to osmotic stress AT4G13850
GO:0009651
ISO
PLAZA Integrative Orthologyresponse to salt stress AT4G13850

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003697
ISO
PLAZA Integrative Orthologysingle-stranded DNA binding AT4G13850
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT4G13850
GO:0034336
ISO
PLAZA Integrative Orthologymisfolded RNA binding AT4G13850
GO:0005507
ISO
PLAZA Integrative Orthologycopper ion binding AT4G13850
GO:0003723
ISO
PLAZA Integrative OrthologyRNA binding AT4G13850
GO:0005524
ISO
PLAZA Integrative OrthologyATP binding AT4G13850
GO:0003676
IEA
InterPronucleic acid binding
GO:0003690
ISO
PLAZA Integrative Orthologydouble-stranded DNA binding AT4G13850

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005739
ISO
PLAZA Integrative Orthologymitochondrion AT4G13850

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000504 RNA recognition motif domain
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 RNA-binding domain superfamily
Mapman id Description
16.11.3.3.2 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.RNA editing factor (ORRM)