Gene: Sopen05g006840

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen05g006840
  • Transcript Identifier Sopen05g006840.1
  • Gene Type Coding gene
  • Location Spenn-ch05 : 5813480-5815478 : negative

Gene Family Information

  • ID HOM05D000685
  • #Genes/#Species 834/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen05g006840.1

Descriptions

  • Description Putative transcription factor with zinc finger and helix-loop-helix domains, the later similar to HMG boxes. Involved in specifying abaxial cell fate in the carpel. Four putative LFY binding sites (CCANTG) and two potential binding sites for MADS box proteins known as CArG boxes (CC(A/T)6GG) were found in the region spanning 3.8 Kb upstream of the CRC coding region. | CRABS CLAW (CRC) | CONTAINS InterPro DOMAIN/s: High mobility group, superfamily , YABBY protein | BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0007275
IEA
InterPromulticellular organism development
GO:0010022
ISO
PLAZA Integrative Orthologymeristem determinacy Os03g0215200
GO:0010582
ISO
PLAZA Integrative Orthologyfloral meristem determinacy AT1G69180
GO:0010094
ISO
PLAZA Integrative Orthologyspecification of carpel identity Os03g0215200
GO:0006355
ISO
PLAZA Integrative Orthologyregulation of transcription, DNA-templated AT1G69180
GO:0048479
ISO
PLAZA Integrative Orthologystyle development AT1G69180
GO:0009944
ISO
PLAZA Integrative Orthologypolarity specification of adaxial/abaxial axis AT1G69180
GO:0048440
ISO
PLAZA Integrative Orthologycarpel development AT1G69180
GO:0048366
ISO
PLAZA Integrative Orthologyleaf development Os03g0215200
GO:0010254
ISO
PLAZA Integrative Orthologynectary development AT1G69180

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000976
ISO
PLAZA Integrative Orthologytranscription cis-regulatory region binding AT1G69180
GO:0043565
ISO
PLAZA Integrative Orthologysequence-specific DNA binding AT1G69180
GO:0003700
ISO
PLAZA Integrative OrthologyDNA-binding transcription factor activity AT1G69180
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G69180

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR006780 YABBY protein
IPR036910 High mobility group box domain superfamily
Mapman id Description
15.5.1.4 RNA biosynthesis.transcriptional regulation.C2C2 transcription factor superfamily.transcription factor (YABBY)