Gene: Sopen04g035870

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen04g035870
  • Transcript Identifier Sopen04g035870.1
  • Gene Type Coding gene
  • Location Spenn-ch04 : 76664244-76667575 : positive

Gene Family Information

  • ID HOM05D000181
  • #Genes/#Species 2101/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen04g035870.1

Descriptions

  • Description Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) (DS9) - Nicotiana tabacum (Common tobacco), VAR1 contains a conserved motif for ATPase and a metalloprotease characteristic to FtsH proteins, and is targeted into chloroplasts. A VAR1-fusion protein synthesized in vitro exhibited ATPase activity and partial metalloprotease activity. This protein is located to the thylakoid membrane and forms a complex with VAR2. FtsH1 (VAR1) and FtsH5 are interchangeable in thylakoid membranes. | VARIEGATED 1 (VAR1) | FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity | INVOLVED IN: photoinhibition, PSII associated light-harvesting complex II catabolic process, protein catabolic process | LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH , ATPase, AAA-type, core , ATPase, AAA type, core , ATPase, AAA-type, conserved site , Peptidase M41 | BEST Arabidopsis thaliana protein match is: FTSH protease 1
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010205
ISO
PLAZA Integrative Orthologyphotoinhibition AT5G42270
GO:0010304
ISO
PLAZA Integrative OrthologyPSII associated light-harvesting complex II catabolic process AT1G50250
GO:0010206
ISO
PLAZA Integrative Orthologyphotosystem II repair AT1G50250
GO:0048564
ISO
PLAZA Integrative Orthologyphotosystem I assembly AT5G42270
GO:0030163
ISO
PLAZA Integrative Orthologyprotein catabolic process AT5G42270
GO:0006508
IEA
InterProproteolysis

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT1G50250
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G50250
GO:0004176
IEA
InterProATP-dependent peptidase activity
GO:0016887
IEA
InterProATP hydrolysis activity
GO:0005524
IEA
InterProATP binding
GO:0004222
IEA
InterPrometalloendopeptidase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009535
ISO
PLAZA Integrative Orthologychloroplast thylakoid membrane AT1G50250
GO:0031977
ISO
PLAZA Integrative Orthologythylakoid lumen AT1G50250
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT1G50250
GO:0009579
ISO
PLAZA Integrative Orthologythylakoid AT5G42270
GO:0009941
ISO
PLAZA Integrative Orthologychloroplast envelope AT1G50250
GO:0009534
ISO
PLAZA Integrative Orthologychloroplast thylakoid AT1G50250
GO:0016020
IEA
InterPromembrane

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR003593 AAA+ ATPase domain
IPR037219 Peptidase M41-like
IPR000642 Peptidase M41
IPR041569 AAA ATPase, AAA+ lid domain
IPR003959 ATPase, AAA-type, core
IPR005936 Peptidase, FtsH
Mapman id Description
1.1.1.4.1 Photosynthesis.photophosphorylation.photosystem II.repair and reassembly cycle.protease (FtsH1/5)
19.4.5.8.2.1 Protein homeostasis.proteolysis.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.component FtsH1/2/5/6/8