Gene: Sopen04g035500
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen04g035500
- Transcript Identifier Sopen04g035500.1
- Gene Type Coding gene
- Location Spenn-ch04 : 76384153-76386413 : negative
Gene Family Information
- ID HOM05D000114
- #Genes/#Species 2914/98
- Phylogenetic origin
- ID ORTHO05D000075
- #Genes/#Species 2458/97
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid Sopen04g035500.1
Descriptions
- Description Expansin-A1 precursor (OsEXPA1) (Alpha-expansin-1) (OsEXP1) (OsaEXPa1.16) (RiExA) - Oryza sativa (Rice), member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) | expansin 11 (EXPA11) | INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening | LOCATED IN: cell wall | EXPRESSED IN: 14 plant structures | EXPRESSED DURING: 9 growth stages | CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase , Pollen allergen, N-terminal , Expansin , Rare lipoprotein A , Expansin/Lol pI , Expansin 45, endoglucanase-like , Pollen allergen/expansin, C-terminal | BEST Arabidopsis thaliana protein match is: expansin A1
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009664 | IEA | InterPro | plant-type cell wall organization | |
| GO:0009828 | ISO | PLAZA Integrative Orthology | plant-type cell wall loosening | AT4G01630 |
| GO:0010311 | ISO | PLAZA Integrative Orthology | lateral root formation | AT4G01630 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005576 | IEA | InterPro | extracellular region | |
| GO:0005618 | ISO | PLAZA Integrative Orthology | cell wall | AT1G20190 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR002963 | Expansin |
| IPR036749 | Expansin, cellulose-binding-like domain superfamily |
| IPR007118 | Expansin/Lol pI |
| IPR036908 | RlpA-like domain superfamily |
| IPR007112 | Expansin/pollen allergen, DPBB domain |
| IPR009009 | RlpA-like protein, double-psi beta-barrel domain |
| IPR007117 | Expansin, cellulose-binding-like domain |
| Mapman id | Description |
|---|---|
| 21.4.2.1 | Cell wall organisation.cell wall proteins.expansin activities.alpha-class expansin |