Gene: Sopen03g037700
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen03g037700
- Transcript Identifier Sopen03g037700.1
- Gene Type Coding gene
- Location Spenn-ch03 : 72149856-72151605 : negative
Gene Family Information
- ID HOM05D000282
- #Genes/#Species 1541/100
- Phylogenetic origin
- ID ORTHO05D000272
- #Genes/#Species 1231/98
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Sopen03g037700.1
Descriptions
- Description Tubulin beta-7 chain (Beta-7 tubulin) (pTUB22) - Oryza sativa (Rice), Encodes a beta-tubulin. Expression of TUB6 has been shown to decrease in response to cold treatment. | beta-6 tubulin (TUB6) | FUNCTIONS IN: structural constituent of cytoskeleton | INVOLVED IN: microtubule-based process, response to salt stress, response to cold | LOCATED IN: microtubule cytoskeleton, plasma membrane | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Beta tubulin , Tubulin , Tubulin/FtsZ, GTPase domain , Tubulin/FtsZ, N-terminal , Tubulin/FtsZ, C-terminal , Beta tubulin, autoregulation binding site , Tubulin, conserved site , Tubulin/FtsZ, 2-layer sandwich domain | BEST Arabidopsis thaliana protein match is: tubulin beta chain 3
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0007017 | IEA | InterPro | microtubule-based process |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003924 | IEA | InterPro | GTPase activity | |
| GO:0005525 | IEA | InterPro | GTP binding | |
| GO:0005200 | IEA | InterPro | structural constituent of cytoskeleton |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005874 | IEA | InterPro | microtubule |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR036525 | Tubulin/FtsZ, GTPase domain superfamily |
| IPR018316 | Tubulin/FtsZ, 2-layer sandwich domain |
| IPR000217 | Tubulin |
| IPR023123 | Tubulin, C-terminal |
| IPR003008 | Tubulin/FtsZ, GTPase domain |
| IPR037103 | Tubulin/FtsZ-like, C-terminal domain |
| IPR002453 | Beta tubulin |
| IPR008280 | Tubulin/FtsZ, C-terminal |
| Mapman id | Description |
|---|---|
| 20.1.1.2 | Cytoskeleton organisation.microtubular network.alpha-beta-Tubulin heterodimer.component beta-Tubulin |