Gene: Sopen02g031410

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen02g031410
  • Transcript Identifier Sopen02g031410.1
  • Gene Type Coding gene
  • Location Spenn-ch02 : 53435224-53441377 : negative

Gene Family Information

  • ID HOM05D000032
  • #Genes/#Species 5307/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen02g031410.1

Descriptions

  • Description ATP-dependent RNA helicase-like protein DB10 (EC 3.6.1.-) - Nicotiana sylvestris (Wood tobacco), DEAD box RNA helicase family protein | FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, ATP binding, nucleic acid binding | LOCATED IN: cellular_component unknown | EXPRESSED IN: 21 plant structures | EXPRESSED DURING: 12 growth stages | CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal , RNA helicase, DEAD-box type, Q motif , RNA helicase, ATP-dependent, DEAD-box, conserved site , WW/Rsp5/WWP , DEAD-like helicase, N-terminal , DNA/RNA helicase, C-terminal , Helicase, superfamily 1/2, ATP-binding domain | BEST Arabidopsis thaliana protein match is: DEAD box RNA helicase 1 ., DNA/RNA helicase, DEAD/DEAH box type, N-terminal
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016070
ISO
PLAZA Integrative OrthologyRNA metabolic process Solyc02g086660.4
GO:0006364
ISO
PLAZA Integrative OrthologyrRNA processing AT3G01540

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0005524
IEA
InterProATP binding
GO:0016887
ISO
PLAZA Integrative OrthologyATP hydrolysis activity AT3G01540
GO:0003724
ISO
PLAZA Integrative OrthologyRNA helicase activity Solyc02g086660.4

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT5G14610
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT5G14610

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR001202 WW domain
IPR001650 Helicase, C-terminal
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR011545 DEAD/DEAH box helicase domain
IPR036020 WW domain superfamily
Mapman id Description
35.1 not assigned.annotated