Gene: Sopen02g030920

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen02g030920
  • Transcript Identifier Sopen02g030920.1
  • Gene Type Coding gene
  • Location Spenn-ch02 : 52967273-52969858 : positive

Gene Family Information

  • ID HOM05D001556
  • #Genes/#Species 410/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen02g030920.1

Descriptions

  • Description encodes a cytosolic ribosomal protein L16, which is a constituent of 60S large ribosomal complex. Gene is expressed in root stele and anthers and expression is induced by auxin treatment. | ribosomal protein large subunit 16A (RPL16A) | FUNCTIONS IN: structural constituent of ribosome | INVOLVED IN: translation | LOCATED IN: cytosolic large ribosomal subunit, nucleolus, chloroplast, vacuole | EXPRESSED IN: 25 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Ribosomal protein L5 , Ribosomal protein L5, conserved site , Ribosomal protein L5, N-terminal , Ribosomal protein L5, C-terminal | BEST Arabidopsis thaliana protein match is: Ribosomal L5P family protein
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006412
IEA
InterProtranslation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003735
IEA
InterProstructural constituent of ribosome
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT2G42740
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT3G58700

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005840
IEA
InterProribosome
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT2G42740
GO:0022626
ISO
PLAZA Integrative Orthologycytosolic ribosome AT4G18730
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT2G42740
GO:0022625
ISO
PLAZA Integrative Orthologycytosolic large ribosomal subunit AT4G18730
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT2G42740
GO:0005773
ISO
PLAZA Integrative Orthologyvacuole AT4G18730

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR022803 Ribosomal protein L5 domain superfamily
IPR002132 Ribosomal protein L5
IPR031310 Ribosomal protein L5, N-terminal
IPR031309 Ribosomal protein L5, C-terminal
Mapman id Description
17.1.2.1.11 Protein biosynthesis.ribosome biogenesis.large ribosomal subunit (LSU).LSU proteome.component RPL11