Gene: Sopen02g025920

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen02g025920
  • Transcript Identifier Sopen02g025920.1
  • Gene Type Coding gene
  • Location Spenn-ch02 : 49017557-49019692 : positive

Gene Family Information

  • ID HOM05D000032
  • #Genes/#Species 5307/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen02g025920.1

Descriptions

  • Description P-loop containing nucleoside triphosphate hydrolases superfamily protein | FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity | LOCATED IN: nucleus, cytoplasm | EXPRESSED IN: 25 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif , DNA/RNA helicase, DEAD/DEAH box type, N-terminal , RNA helicase, ATP-dependent, DEAD-box, conserved site , DEAD-like helicase, N-terminal , DNA/RNA helicase, C-terminal , Helicase, superfamily 1/2, ATP-binding domain | BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016070
ISO
PLAZA Integrative OrthologyRNA metabolic process Solyc02g081290.4
GO:2000636
ISO
PLAZA Integrative Orthologypositive regulation of primary miRNA processing AT2G33730
GO:1903800
ISO
PLAZA Integrative Orthologypositive regulation of production of miRNAs involved in gene silencing by miRNA AT2G33730
GO:0000398
ISO
PLAZA Integrative OrthologymRNA splicing, via spliceosome AT2G33730

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0005524
IEA
InterProATP binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT2G33730
GO:0003724
ISO
PLAZA Integrative OrthologyRNA helicase activity Solyc02g081290.4
GO:0140223
ISO
PLAZA Integrative Orthologygeneral transcription initiation factor activity AT2G33730

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT2G33730
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT2G33730

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR001650 Helicase, C-terminal
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR011545 DEAD/DEAH box helicase domain
Mapman id Description
16.2.7.1.3 RNA processing.pre-mRNA splicing.spliceosome assembly and disassembly.RNA helicase activities.RNA helicase (Prp28)