Gene: Sopen02g019420
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen02g019420
- Transcript Identifier Sopen02g019420.1
- Gene Type Coding gene
- Location Spenn-ch02 : 43413722-43415789 : positive
Gene Family Information
- ID HOM05D001072
- #Genes/#Species 571/100
- Phylogenetic origin
- ID ORTHO05D001945
- #Genes/#Species 334/99
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid Sopen02g019420.1
Descriptions
- Description 40S ribosomal protein S4 - Solanum tuberosum (Potato), Ribosomal protein S4 (RPS4A) family protein | FUNCTIONS IN: structural constituent of ribosome | INVOLVED IN: translation | LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, nucleolus, membrane | EXPRESSED IN: 25 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Ribosomal protein S4e, central , Ribosomal protein S4e, N-terminal, conserved site , KOW , RNA-binding S4 , Ribosomal protein S4e, N-terminal , Ribosomal protein S4e | BEST Arabidopsis thaliana protein match is: Ribosomal protein S4 (RPS4A) family protein
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006412 | IEA | InterPro | translation |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003723 | IEA | InterPro | RNA binding | |
| GO:0003735 | IEA | InterPro | structural constituent of ribosome |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005840 | IEA | InterPro | ribosome |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR041982 | Ribosomal protein S4, KOW domain |
| IPR032277 | 40S ribosomal protein S4, C-terminal domain |
| IPR013845 | Ribosomal protein S4e, central region |
| IPR038237 | Ribosomal protein S4e, central domain superfamily |
| IPR002942 | RNA-binding S4 domain |
| IPR014722 | Ribosomal protein L2, domain 2 |
| IPR013843 | Ribosomal protein S4e, N-terminal |
| IPR005824 | KOW |
| IPR000876 | Ribosomal protein S4e |
| IPR036986 | RNA-binding S4 domain superfamily |
| Mapman id | Description |
|---|---|
| 17.1.3.1.5 | Protein biosynthesis.ribosome biogenesis.small ribosomal subunit (SSU).SSU proteome.component RPS4 |