Gene: Sopen01g039740

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen01g039740
  • Transcript Identifier Sopen01g039740.1
  • Gene Type Coding gene
  • Location Spenn-ch01 : 97382884-97386138 : negative

Gene Family Information

  • ID HOM05D000390
  • #Genes/#Species 1264/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen01g039740.1

Descriptions

  • Description Protein with RING/U-box and TRAF-like domains | FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding | INVOLVED IN: multicellular organismal development, ubiquitin-dependent protein catabolic process, protein ubiquitination | LOCATED IN: nucleus | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: TRAF-like , Seven-in-absentia protein, TRAF-like domain , Zinc finger, SIAH-type , Zinc finger, RING-type , Seven In Absentia Homolog-type , Seven-in-absentia protein, sina , TRAF-type | BEST Arabidopsis thaliana protein match is: Protein with RING/U-box and TRAF-like domains
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006511
IEA
InterProubiquitin-dependent protein catabolic process
GO:0007275
IEA
InterPromulticellular organism development

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IEA
InterProcytoplasm

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR018121 Seven-in-absentia protein, TRAF-like domain
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR008974 TRAF-like
Mapman id Description
19.2.2.1.4.3.5 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.RING-domain E3 ligase activities.E3 ubiquitin ligase (SINA)