Gene: Sopen01g036990

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen01g036990
  • Transcript Identifier Sopen01g036990.1
  • Gene Type Coding gene
  • Location Spenn-ch01 : 95137685-95139562 : negative

Gene Family Information

  • ID HOM05D000001
  • #Genes/#Species 35287/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen01g036990.1

Descriptions

  • Description Encodes a member of a PCMP (plant combinatorial and modular protein) family (PCMP-E subfamily) with 11 pentatricopeptide (PPR) repeats. The protein is involved in RNA editing of the initiation codon of ndhD in the chloroplast. | CHLORORESPIRATORY REDUCTION 4 (CRR4) | INVOLVED IN: mRNA modification | LOCATED IN: chloroplast, vacuole | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:1900865
ISO
PLAZA Integrative Orthologychloroplast RNA modification AT2G45350
GO:0016556
ISO
PLAZA Integrative OrthologymRNA modification AT2G45350

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT2G45350
GO:0005773
ISO
PLAZA Integrative Orthologyvacuole AT2G45350

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002885 Pentatricopeptide repeat
IPR011990 Tetratricopeptide-like helical domain superfamily
Mapman id Description
16.11.3.3.4.56 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.PPR-type RNA editing factor activities.RNA editing factor (CRR4)