Gene: Sopen01g023080

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen01g023080
  • Transcript Identifier Sopen01g023080.1
  • Gene Type Coding gene
  • Location Spenn-ch01 : 70246758-70252420 : negative

Gene Family Information

  • ID HOM05D006453
  • #Genes/#Species 124/89
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen01g023080.1

Descriptions

  • Description Encodes a 85.9 kDa protein containing novel repeats and zinc fingers described as protein interaction domains. VAR3 is a part of a protein complex required for normal chloroplast and palisade cell development. Mutants display a variegated phenotype due to somatic areas lacking or containing developmentally retarded chloroplasts and greatly reduced numbers of palisade cells. | VARIEGATED 3 (VAR3) | FUNCTIONS IN: binding, zinc ion binding | INVOLVED IN: chloroplast organization | LOCATED IN: chloroplast, chloroplast stroma | EXPRESSED IN: 21 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Zinc finger, RanBP2-type | BEST Arabidopsis thaliana protein match is: zinc finger (Ran-binding) family protein
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:1900871
ISO
PLAZA Integrative Orthologychloroplast mRNA modification AT5G17790
GO:0009658
ISO
PLAZA Integrative Orthologychloroplast organization AT5G17790

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G17790
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT5G17790

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009570
ISO
PLAZA Integrative Orthologychloroplast stroma AT5G17790
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT5G17790

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
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InterPro Description
IPR001876 Zinc finger, RanBP2-type
IPR036443 Zinc finger, RanBP2-type superfamily
Mapman id Description
16.11.3.3.3 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.RNA editing factor (OZ)