Gene: Sopen01g016800

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen01g016800
  • Transcript Identifier Sopen01g016800.1
  • Gene Type Coding gene
  • Location Spenn-ch01 : 47210148-47213824 : negative

Gene Family Information

  • ID HOM05D000867
  • #Genes/#Species 692/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen01g016800.1

Descriptions

  • Description Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3 UTR of target mRNA transcripts. | pumilio 12 (PUM12) | FUNCTIONS IN: RNA binding, binding | LOCATED IN: nucleus, cytoplasm | EXPRESSED IN: 7 plant structures | EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage | CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat , Armadillo-like helical , Armadillo-type fold | BEST Arabidopsis thaliana protein match is: pumilio 7
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Functional Annotation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
InterProRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT5G56510
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT5G56510

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
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InterPro Description
IPR011989 Armadillo-like helical
IPR001313 Pumilio RNA-binding repeat
IPR033712 Pumilio, RNA binding domain
IPR016024 Armadillo-type fold
Mapman id Description
35.1 not assigned.annotated