Gene: Sopen01g006960

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen01g006960
  • Transcript Identifier Sopen01g006960.1
  • Gene Type Coding gene
  • Location Spenn-ch01 : 7259806-7262469 : negative

Gene Family Information

  • ID HOM05D001252
  • #Genes/#Species 498/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen01g006960.1

Descriptions

  • Description Eukaryotic translation initiation factor 5A-4 (eIF-5A-4) (eIF-4D) - Solanum tuberosum (Potato), Encodes eukaryotic translation initiation factor 5A (EIF-5A).In mammalian cells it functions as a shuttle protein that translocates mRNA from the nucleus to cytoplasmic ribosomes. Overexpression results in an increase in both primary and secondary xylem formation. In RNAi suppressed lines, xylem formation is reduced. | eukaryotic elongation factor 5A-1 (ELF5A-1) | FUNCTIONS IN: ribosome binding, RNA binding, translation elongation factor activity, translation initiation factor activity | INVOLVED IN: translational initiation, xylem development | LOCATED IN: cellular_component unknown | EXPRESSED IN: 18 plant structures | EXPRESSED DURING: 11 growth stages | CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold , Translation elongation factor, IF5A, hypusine site , Translation protein SH3-like, subgroup , Translation elongation factor, IF5A , Translation elongation factor, IF5A C-terminal , Translation protein SH3-like , Nucleic acid-binding, OB-fold-like , KOW | BEST Arabidopsis thaliana protein match is: eukaryotic elongation factor 5A-3
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0045901
IEA
InterPropositive regulation of translational elongation
GO:0045905
IEA
InterPropositive regulation of translational termination
GO:0009617
ISO
PLAZA Integrative Orthologyresponse to bacterium AT1G26630
GO:0034050
ISO
PLAZA Integrative Orthologyprogrammed cell death induced by symbiont AT1G26630
GO:0009611
ISO
PLAZA Integrative Orthologyresponse to wounding AT1G26630
GO:0046686
ISO
PLAZA Integrative Orthologyresponse to cadmium ion AT1G26630
GO:0006413
ISO
PLAZA Integrative Orthologytranslational initiation AT1G26630
GO:0042742
ISO
PLAZA Integrative Orthologydefense response to bacterium AT1G26630
GO:0012501
ISO
PLAZA Integrative Orthologyprogrammed cell death AT1G26630
GO:0010089
ISO
PLAZA Integrative Orthologyxylem development AT1G13950

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
InterProRNA binding
GO:0003746
IEA
InterProtranslation elongation factor activity
GO:0043022
IEA
InterProribosome binding
GO:0003743
ISO
PLAZA Integrative Orthologytranslation initiation factor activity AT1G26630
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT1G26630

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G26630

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001884 Translation elongation factor IF5A-like
IPR008991 Translation protein SH3-like domain superfamily
IPR012340 Nucleic acid-binding, OB-fold
IPR020189 Translation elongation factor, IF5A C-terminal
IPR014722 Ribosomal protein L2, domain 2
Mapman id Description
17.5.3.1 Protein biosynthesis.translation elongation.eEF5 poly-P/G elongation factor activity.poly-P/G elongation factor (eEF5/eIF5A)