Gene: Solyc12g098490.2
General Information
Structural Information
- Species Solanum lycopersicum
- Gene Identifier Solyc12g098490.2
- Transcript Identifier Solyc12g098490.2.1
- Gene Type Coding gene
- Location SL4.0ch12 : 65513596-65516489 : negative
Gene Family Information
- ID HOM05D000575
- #Genes/#Species 966/99
- Phylogenetic origin
- ID ORTHO05D004524
- #Genes/#Species 178/97
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid Solyc12g098490.2.1
- uniprot A0A3Q7JE99
- gene_id Solyc12g098490
Descriptions
- Description Serine hydroxymethyltransferase (AHRD V3.3 *** A0A2G3CI35_CAPCH)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0046655 | IBA | GOA Database | folic acid metabolic process | |
| GO:0007623 | ISO | PLAZA Integrative Orthology | circadian rhythm | AT4G13930 |
| GO:0046686 | ISO | PLAZA Integrative Orthology | response to cadmium ion | AT4G13930 |
| GO:0009555 | ISO | PLAZA Integrative Orthology | pollen development | AT4G13890 |
| GO:0010197 | ISO | PLAZA Integrative Orthology | polar nucleus fusion | AT4G13890 |
| GO:0019264 | IBA IEA | GOA Database | glycine biosynthetic process from serine | |
| GO:0019264 | IEA | InterPro | glycine biosynthetic process from serine | |
| GO:0006730 | IBA IEA | GOA Database | one-carbon metabolic process | |
| GO:0006565 | IBA | GOA Database | L-serine catabolic process | |
| GO:0046653 | IBA | GOA Database | tetrahydrofolate metabolic process | |
| GO:0035999 | IEA | GOA Database | tetrahydrofolate interconversion | |
| GO:0035999 | IEA | InterPro | tetrahydrofolate interconversion |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT4G13930 |
| GO:0030170 | IBA IEA | GOA Database | pyridoxal phosphate binding | |
| GO:0030170 | IEA | InterPro | pyridoxal phosphate binding | |
| GO:0008270 | IBA | GOA Database | zinc ion binding | |
| GO:0004372 | IBA IEA | GOA Database | glycine hydroxymethyltransferase activity | |
| GO:0004372 | IEA | InterPro | glycine hydroxymethyltransferase activity | |
| GO:0050897 | IBA | GOA Database | cobalt ion binding | |
| GO:0070905 | IBA | GOA Database | serine binding | |
| GO:0003824 | IEA | GOA Database | catalytic activity | |
| GO:0003824 | IEA | InterPro | catalytic activity | |
| GO:0016740 | IEA | GOA Database | transferase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005886 | ISO | PLAZA Integrative Orthology | plasma membrane | AT4G13930 |
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT4G13930 |
| GO:0009506 | ISO | PLAZA Integrative Orthology | plasmodesma | AT4G13930 |
| GO:0005737 | IBA | GOA Database | cytoplasm |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR001085 | Serine hydroxymethyltransferase |
| IPR039429 | Serine hydroxymethyltransferase-like domain |
| IPR015421 | Pyridoxal phosphate-dependent transferase, major domain |
| IPR015422 | Pyridoxal phosphate-dependent transferase, small domain |
| IPR015424 | Pyridoxal phosphate-dependent transferase |