Gene: Solyc12g044610.2

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc12g044610.2
  • Transcript Identifier Solyc12g044610.2.1
  • Gene Type Coding gene
  • Location SL4.0ch12 : 59292973-59300483 : negative

Gene Family Information

  • ID HOM05D000095
  • #Genes/#Species 3348/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc12g044610.2.1
  • uniprot A0A3Q7JA32
  • gene_id Solyc12g044610

Descriptions

  • Description Transcription factor MYB1R1 (AHRD V3.3 *** A0A2G3B343_CAPCH)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009723
IBA
GOA Databaseresponse to ethylene
GO:0009733
IBA
GOA Databaseresponse to auxin
GO:0009739
IBA
GOA Databaseresponse to gibberellin
GO:0045893
ISO
PLAZA Integrative Orthologypositive regulation of transcription, DNA-templated Os10g0562100
GO:0080033
ISO
PLAZA Integrative Orthologyresponse to nitrite AT3G16350
GO:0006355
ISO
PLAZA Integrative Orthologyregulation of transcription, DNA-templated AT3G16350
GO:0009744
ISO
PLAZA Integrative Orthologyresponse to sucrose Os10g0562100

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0008270
IEA
GOA Databasezinc ion binding
GO:0003700
ISO
PLAZA Integrative OrthologyDNA-binding transcription factor activity Os10g0562100
GO:0000976
ISO
PLAZA Integrative Orthologytranscription cis-regulatory region binding AT3G16350
GO:0000987
ISO
PLAZA Integrative Orthologycis-regulatory region sequence-specific DNA binding AT3G16350

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR017930 Myb domain
IPR001005 SANT/Myb domain
IPR009057 Homeobox-like domain superfamily
IPR006447 Myb domain, plants
Mapman id Description
15.5.2.2 RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (MYB-related)