Gene: Solyc08g080550.1

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc08g080550.1
  • Transcript Identifier Solyc08g080550.1.1
  • Gene Type Coding gene
  • Location SL4.0ch08 : 61932291-61933937 : positive

Gene Family Information

  • ID HOM05D000032
  • #Genes/#Species 5307/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc08g080550.1.1
  • uniprot A0A3Q7HTX4
  • gene_id Solyc08g080550

Descriptions

  • Description DEAD-box ATP-dependent RNA helicase 47A (AHRD V3.3 *** A0A2G3DB95_CAPCH)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009663
ISO
PLAZA Integrative Orthologyplasmodesma organization AT1G12770
GO:0010497
ISO
PLAZA Integrative Orthologyplasmodesmata-mediated intercellular transport AT1G12770

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0003724
IBA
IEA
GOA DatabaseRNA helicase activity
GO:0003723
IBA
GOA DatabaseRNA binding
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT1G12770

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005739
ISO
PLAZA Integrative Orthologymitochondrion AT1G12770

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR001650 Helicase, C-terminal
IPR011545 DEAD/DEAH box helicase domain
Mapman id Description
35.1 not assigned.annotated