Gene: Solyc08g005240.3
General Information
Structural Information
- Species Solanum lycopersicum
- Gene Identifier Solyc08g005240.3
- Transcript Identifier Solyc08g005240.3.1
- Gene Type Coding gene
- Location SL4.0ch08 : 176439-180063 : positive
Gene Family Information
- ID HOM05D000329
- #Genes/#Species 1418/100
- Phylogenetic origin
- ID ORTHO05D002813
- #Genes/#Species 260/97
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid Solyc08g005240.3.1
- uniprot A0A3Q7HJ33
- gene_id Solyc08g005240
Descriptions
- Description Transcription factor jumonji (Jmj) family protein / zinc finger (C5HC2 type) family protein (AHRD V3.3 *** F4KIX0_ARATH)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0034721 | IEA | GOA Database | histone H3-K4 demethylation, trimethyl-H3-K4-specific | |
| GO:0016577 | IEA | GOA Database | histone demethylation | |
| GO:0006338 | IBA | GOA Database | chromatin remodeling |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0034647 | IBA | GOA Database | histone demethylase activity (H3-trimethyl-K4 specific) | |
| GO:0032452 | IBA | GOA Database | histone demethylase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016021 | IEA | GOA Database | integral component of membrane | |
| GO:0016020 | IEA | GOA Database | membrane | |
| GO:0005634 | IBA | GOA Database | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 12.3.3.8.5 | Chromatin organisation.post-translational histone modification.histone lysine methylation.JmjC group histone demethylase activities.histone demethylase (PKDM8) |