Gene: Solyc07g049720.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc07g049720.4
  • Transcript Identifier Solyc07g049720.4.1
  • Gene Type Coding gene
  • Location SL4.0ch07 : 59981118-59988898 : negative

Gene Family Information

  • ID HOM05D002795
  • #Genes/#Species 248/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc07g049720.4.1
  • uniprot A0A3Q7HDM5
  • gene_id Solyc07g049720

Descriptions

  • Description 10kDa polypeptide precursor of photosystem 2
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006265
IBA
IEA
GOA DatabaseDNA topological change
GO:0006265
IEA
InterProDNA topological change
GO:0048439
ISO
PLAZA Integrative Orthologyflower morphogenesis AT5G55300
GO:0009965
ISO
PLAZA Integrative Orthologyleaf morphogenesis AT5G55300
GO:1905393
ISO
PLAZA Integrative Orthologyplant organ formation AT5G55300
GO:0009933
ISO
PLAZA Integrative Orthologymeristem structural organization AT5G55300
GO:0010016
ISO
PLAZA Integrative Orthologyshoot system morphogenesis AT5G55300
GO:0009791
ISO
PLAZA Integrative Orthologypost-embryonic development AT5G55300
GO:0009793
ISO
PLAZA Integrative Orthologyembryo development ending in seed dormancy AT5G55300
GO:0019827
ISO
PLAZA Integrative Orthologystem cell population maintenance AT5G55300
GO:0010075
ISO
PLAZA Integrative Orthologyregulation of meristem growth AT5G55300
GO:0007059
IBA
GOA Databasechromosome segregation
GO:0006338
IBA
GOA Databasechromatin remodeling
GO:0006260
IBA
GOA DatabaseDNA replication

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G55300
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0003917
IBA
IEA
GOA DatabaseDNA topoisomerase type I (single strand cut, ATP-independent) activity
GO:0003917
IEA
InterProDNA topoisomerase type I (single strand cut, ATP-independent) activity
GO:0016853
IEA
GOA Databaseisomerase activity
GO:0003916
IEA
GOA DatabaseDNA topoisomerase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT5G55300
GO:0005730
IBA
GOA Databasenucleolus
GO:0005694
IEA
GOA Databasechromosome
GO:0005694
IEA
InterProchromosome

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR013499 DNA topoisomerase I, eukaryotic-type
IPR036202 DNA topoisomerase I, DNA binding, eukaryotic-type, N-terminal domain superfamily
IPR008336 DNA topoisomerase I, DNA binding, eukaryotic-type
IPR013034 DNA topoisomerase I, DNA binding, N-terminal domain 1
IPR001631 DNA topoisomerase I
IPR014711 DNA topoisomerase I, catalytic core, alpha-helical subdomain, eukaryotic-type
IPR013500 DNA topoisomerase I, catalytic core, eukaryotic-type
IPR013030 DNA topoisomerase I, DNA binding, N-terminal domain 2
IPR011010 DNA breaking-rejoining enzyme, catalytic core
Mapman id Description
13.2.1.5 Cell cycle organisation.DNA replication.preinitiation.DNA topoisomerase (TOP1)