Gene: Solyc05g049870.3
General Information
Structural Information
- Species Solanum lycopersicum
- Gene Identifier Solyc05g049870.3
- Transcript Identifier Solyc05g049870.3.1
- Gene Type Coding gene
- Location SL4.0ch05 : 58996788-58999247 : positive
Gene Family Information
- ID HOM05D000612
- #Genes/#Species 928/98
- Phylogenetic origin
- ID ORTHO05D000461
- #Genes/#Species 906/98
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Solyc05g049870.3.1
- uniprot A0A3Q7GLD9
- gene_id Solyc05g049870
Descriptions
- Description LIM domain-containing protein (AHRD V3.3 *** A0A1Q3C877_CEPFO)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0051017 | IBA | GOA Database | actin filament bundle assembly |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0046872 | IEA | GOA Database | metal ion binding | |
| GO:0051015 | IBA | GOA Database | actin filament binding | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | Os04g0532500 |
| GO:0000976 | ISO | PLAZA Integrative Orthology | transcription cis-regulatory region binding | AT1G01780 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005886 | IBA | GOA Database | plasma membrane | |
| GO:0015629 | IBA | GOA Database | actin cytoskeleton |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR001781 | Zinc finger, LIM-type |
| Mapman id | Description |
|---|---|
| 15.5.39 | RNA biosynthesis.transcriptional regulation.transcription factor (LIM) |