Gene: Solyc04g080980.2

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc04g080980.2
  • Transcript Identifier Solyc04g080980.2.1
  • Gene Type Coding gene
  • Location SL4.0ch04 : 63015228-63020255 : negative

Gene Family Information

  • ID HOM05D001785
  • #Genes/#Species 366/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc04g080980.2.1
  • uniprot K4BVH7
  • gene_id Solyc04g080980

Descriptions

  • Description Coatomer subunit alpha (AHRD V3.3 *** A0A2G3CQY1_CAPCH)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006891
IBA
GOA Databaseintra-Golgi vesicle-mediated transport
GO:0006890
IBA
GOA Databaseretrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0006888
IBA
GOA Databaseendoplasmic reticulum to Golgi vesicle-mediated transport
GO:0006886
IBA
IEA
GOA Databaseintracellular protein transport
GO:0006886
IEA
InterProintracellular protein transport
GO:0016192
IEA
GOA Databasevesicle-mediated transport
GO:0016192
IEA
InterProvesicle-mediated transport
GO:0015031
IEA
GOA Databaseprotein transport

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005198
IEA
GOA Databasestructural molecule activity
GO:0005198
IEA
InterProstructural molecule activity
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005794
IEA
GOA DatabaseGolgi apparatus
GO:0005886
ISO
PLAZA Integrative Orthologyplasma membrane AT1G62020
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT2G21390
GO:0030126
IBA
IEA
GOA DatabaseCOPI vesicle coat
GO:0030126
IEA
InterProCOPI vesicle coat
GO:0030117
IEA
GOA Databasemembrane coat
GO:0030117
IEA
InterPromembrane coat
GO:0005737
IEA
GOA Databasecytoplasm
GO:0000139
IEA
GOA DatabaseGolgi membrane
GO:0016020
IEA
GOA Databasemembrane

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR020472 G-protein beta WD-40 repeat
IPR001680 WD40 repeat
IPR036322 WD40-repeat-containing domain superfamily
IPR010714 Coatomer, alpha subunit, C-terminal
IPR016391 Coatomer alpha subunit
IPR015943 WD40/YVTN repeat-like-containing domain superfamily
IPR006692 Coatomer, WD associated region
Mapman id Description
22.2.1.1.1 Vesicle trafficking.Golgi-ER retrograde trafficking.Coat protein I (COPI) coatomer machinery.coat protein complex.subunit alpha