Gene: Solyc02g086540.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc02g086540.3
  • Transcript Identifier Solyc02g086540.3.1
  • Gene Type Coding gene
  • Location SL4.0ch02 : 47221657-47224895 : negative

Gene Family Information

  • ID HOM05D001331
  • #Genes/#Species 472/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc02g086540.3.1
  • uniprot A0A3Q7F9J0
  • gene_id Solyc02g086540

Descriptions

  • Description Sister chromatid cohesion 1 protein 4 (AHRD V3.3 *-* A0A2G3DGK5_CAPCH)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:1990414
IBA
GOA Databasereplication-born double-strand break repair via sister chromatid exchange
GO:0000278
ISO
PLAZA Integrative Orthologymitotic cell cycle AT3G59550
GO:0009555
ISO
PLAZA Integrative Orthologypollen development AT3G59550
GO:0009561
ISO
PLAZA Integrative Orthologymegagametogenesis AT3G59550
GO:0007130
IBA
GOA Databasesynaptonemal complex assembly
GO:0007064
IBA
GOA Databasemitotic sister chromatid cohesion
GO:0007062
IEA
GOA Databasesister chromatid cohesion
GO:0007062
IEA
InterProsister chromatid cohesion

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003682
IBA
GOA Databasechromatin binding
GO:0016740
IEA
GOA Databasetransferase activity
GO:0016757
IEA
GOA Databaseglycosyltransferase activity
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT3G59550
GO:0000795
IBA
GOA Databasesynaptonemal complex
GO:0034990
IBA
GOA Databasenuclear mitotic cohesin complex
GO:0034991
IBA
GOA Databasenuclear meiotic cohesin complex
GO:0008278
IEA
GOA Databasecohesin complex
GO:0008278
IEA
InterProcohesin complex
GO:0016021
IEA
GOA Databaseintegral component of membrane
GO:0005634
IEA
GOA Databasenucleus
GO:0016020
IEA
GOA Databasemembrane

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR039781 Rad21/Rec8-like protein
IPR036390 Winged helix DNA-binding domain superfamily
IPR023093 ScpA-like, C-terminal
IPR006909 Rad21/Rec8-like protein, C-terminal, eukaryotic
IPR006910 Rad21/Rec8-like protein, N-terminal
Mapman id Description
13.3.4.1.3 Cell cycle organisation.mitosis and meiosis.sister chromatid separation.cohesin regulator complex.mitotic-specific Kleisin-type component SCC1