Gene: Solyc02g081010.3
General Information
Structural Information
- Species Solanum lycopersicum
- Gene Identifier Solyc02g081010.3
- Transcript Identifier Solyc02g081010.3.1
- Gene Type Coding gene
- Location SL4.0ch02 : 43056021-43060877 : negative
Gene Family Information
- ID HOM05D000451
- #Genes/#Species 1160/99
- Phylogenetic origin
- ID ORTHO05D000351
- #Genes/#Species 1073/99
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Solyc02g081010.3.1
- uniprot A0A3Q7FSG9
- gene_id Solyc02g081010
Descriptions
- Description Lysine-specific demethylase JMJ25 (AHRD V3.3 *** A0A2G3A990_CAPAN)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0033169 | IBA IEA | GOA Database | histone H3-K9 demethylation | |
GO:0033169 | IEA | InterPro | histone H3-K9 demethylation | |
GO:0006357 | IBA | GOA Database | regulation of transcription by RNA polymerase II | |
GO:2000039 | ISO | PLAZA Integrative Orthology | regulation of trichome morphogenesis | AT1G62310 |
GO:0051567 | ISO | PLAZA Integrative Orthology | histone H3-K9 methylation | AT1G62310 |
Molecular Function
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0032454 | IBA IEA | GOA Database | histone demethylase activity (H3-K9 specific) | |
GO:0032454 | IEA | InterPro | histone demethylase activity (H3-K9 specific) | |
GO:0003712 | IBA | GOA Database | transcription coregulator activity | |
GO:0031490 | IBA | GOA Database | chromatin DNA binding |
Cellular Component
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0005634 | IEA | GOA Database | nucleus | |
GO:0000118 | IBA | GOA Database | histone deacetylase complex | |
GO:0000785 | IBA | GOA Database | chromatin |
Color Legend
Experimental Evidence |
Computational Reviewed Evidence |
Electronic Evidence |
Mapman id | Description |
---|---|
12.3.3.8.1 | Chromatin organisation.post-translational histone modification.histone lysine methylation.JmjC group histone demethylase activities.histone demethylase (KDM3) |