Gene: Solyc02g078490.3
General Information
Structural Information
- Species Solanum lycopersicum
- Gene Identifier Solyc02g078490.3
- Transcript Identifier Solyc02g078490.3.1
- Gene Type Coding gene
- Location SL4.0ch02 : 41142111-41146585 : positive
Gene Family Information
- ID HOM05D001563
- #Genes/#Species 409/100
- Phylogenetic origin
- ID ORTHO05D017609
- #Genes/#Species 9/7
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Solyc02g078490.3.1
- uniprot A0A3Q7F4K9
- gene_id Solyc02g078490
Descriptions
- Description splicing factor U2af large subunit A isoform X1 (AHRD V3.3 *** XP_010316737.1)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006397 | ISO | PLAZA Homology (enrichment) | mRNA processing | HOM05D001563 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0030628 | IBA | GOA Database | pre-mRNA 3'-splice site binding | |
| GO:0008187 | IBA | GOA Database | poly-pyrimidine tract binding | |
| GO:0003676 | ISO | PLAZA Homology (enrichment) | nucleic acid binding | HOM05D001563 |
| GO:0003723 | ISO | PLAZA Homology (enrichment) | RNA binding | HOM05D001563 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0071004 | IBA | GOA Database | U2-type prespliceosome | |
| GO:0000243 | IBA | GOA Database | commitment complex | |
| GO:0016607 | IBA | GOA Database | nuclear speck | |
| GO:0089701 | IBA | GOA Database | U2AF complex | |
| GO:0005634 | ISO | PLAZA Homology (enrichment) | nucleus | HOM05D001563 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
No InterPro domains detected for this gene.
| Mapman id | Description |
|---|---|
| 35.2 | not assigned.not annotate |