Gene: Solyc01g021690.1

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc01g021690.1
  • Transcript Identifier Solyc01g021690.1.1
  • Gene Type Coding gene
  • Location SL4.0ch01 : 32604849-32605247 : positive

Gene Family Information

  • ID HOM05D001069
  • #Genes/#Species 573/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc01g021690.1.1
  • uniprot A0A3Q7EDD4
  • gene_id Solyc01g021690

Descriptions

  • Description E3 ubiquitin protein ligase DRIP1-like (AHRD V3.3 *-* XP_025888788.1)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006396
IEA
GOA DatabaseRNA processing
GO:0006396
IEA
InterProRNA processing
GO:0000387
IBA
GOA Databasespliceosomal snRNP assembly

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IBA
GOA DatabaseRNA binding
GO:0004842
ISO
PLAZA Homology (enrichment)ubiquitin-protein transferase activity HOM05D001069

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0071013
IBA
GOA Databasecatalytic step 2 spliceosome
GO:0071011
IBA
GOA Databaseprecatalytic spliceosome
GO:0034719
IBA
GOA DatabaseSMN-Sm protein complex
GO:0034715
IBA
GOA DatabasepICln-Sm protein complex
GO:0005689
IBA
GOA DatabaseU12-type spliceosomal complex
GO:0005687
IBA
GOA DatabaseU4 snRNP
GO:0005686
IBA
GOA DatabaseU2 snRNP
GO:0005685
IBA
GOA DatabaseU1 snRNP
GO:0005682
IBA
GOA DatabaseU5 snRNP
GO:0000243
IBA
GOA Databasecommitment complex
GO:0097526
IBA
GOA Databasespliceosomal tri-snRNP complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027141 Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3
Mapman id Description
35.2 not assigned.not annotate