Gene: Solyc00g500047.1
General Information
Structural Information
- Species Solanum lycopersicum
- Gene Identifier Solyc00g500047.1
- Transcript Identifier Solyc00g500047.1.1
- Gene Type Coding gene
- Location SL4.0ch00 : 1456896-1458386 : positive
Gene Family Information
- ID HOM05D000540
- #Genes/#Species 1013/99
- Phylogenetic origin
- ID ORTHO05D000681
- #Genes/#Species 683/95
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- tid Solyc00g500047.1.1
- gene_id Solyc00g500047
Descriptions
- Description 50S ribosomal protein L2, chloroplastic (AHRD V3.3 *** A0A1C8V6E3_9ROSI)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006412 | IEA | InterPro | translation |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003735 | IEA | InterPro | structural constituent of ribosome | |
| GO:0003723 | IEA | InterPro | RNA binding | |
| GO:0016740 | IEA | InterPro | transferase activity | |
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | ATCG00830 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005840 | IEA | InterPro | ribosome | |
| GO:0015934 | IEA | InterPro | large ribosomal subunit | |
| GO:0009570 | ISO | PLAZA Integrative Orthology | chloroplast stroma | ATCG01310 |
| GO:0009507 | ISO | PLAZA Integrative Orthology | chloroplast | ATCG01310 |
| GO:0009941 | ISO | PLAZA Integrative Orthology | chloroplast envelope | ATCG01310 |
| GO:0000311 | ISO | PLAZA Integrative Orthology | plastid large ribosomal subunit | ATCG00830 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR022669 | Ribosomal protein L2, C-terminal |
| IPR008991 | Translation protein SH3-like domain superfamily |
| IPR022666 | Ribosomal Proteins L2, RNA binding domain |
| IPR005880 | Ribosomal protein L2, bacterial/organellar-type |
| IPR014722 | Ribosomal protein L2, domain 2 |
| IPR002171 | Ribosomal protein L2 |
| IPR012340 | Nucleic acid-binding, OB-fold |
| IPR014726 | Ribosomal protein L2, domain 3 |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |