Gene: Sed0009863

General Information

Structural Information

  • Species Sechium edule
  • Gene Identifier Sed0009863
  • Transcript Identifier Sed0009863.1
  • Gene Type Coding gene
  • Location LG01 : 17377148-17378093 : positive

Gene Family Information

  • ID HOM05D000142
  • #Genes/#Species 2580/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sed0009863.1

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009651
ISO
PLAZA Integrative Orthologyresponse to salt stress AT4G13850
GO:0006970
ISO
PLAZA Integrative Orthologyresponse to osmotic stress AT4G13850
GO:0009631
ISO
PLAZA Integrative Orthologycold acclimation AT4G13850
GO:0009845
ISO
PLAZA Integrative Orthologyseed germination AT4G13850
GO:0060567
ISO
PLAZA Integrative Orthologynegative regulation of DNA-templated transcription, termination AT4G13850
GO:0009414
ISO
PLAZA Integrative Orthologyresponse to water deprivation AT4G13850
GO:0009409
ISO
PLAZA Integrative Orthologyresponse to cold AT4G13850

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0003690
ISO
PLAZA Integrative Orthologydouble-stranded DNA binding AT4G13850
GO:0003697
ISO
PLAZA Integrative Orthologysingle-stranded DNA binding AT4G13850
GO:0005524
ISO
PLAZA Integrative OrthologyATP binding AT4G13850
GO:0003723
ISO
PLAZA Integrative OrthologyRNA binding AT4G13850
GO:0005507
ISO
PLAZA Integrative Orthologycopper ion binding AT4G13850
GO:0034336
ISO
PLAZA Integrative Orthologymisfolded RNA binding AT4G13850
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT4G13850

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005739
ISO
PLAZA Integrative Orthologymitochondrion AT4G13850

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR035979 RNA-binding domain superfamily
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR000504 RNA recognition motif domain
IPR003954 RNA recognition motif domain, eukaryote
Mapman id Description
16.11.3.3.2 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.RNA editing factor (ORRM)