Gene: SHI24519

General Information

Structural Information

  • Species Sapria himalayana
  • Gene Identifier SHI24519
  • Transcript Identifier SHI24519-RA
  • Gene Type Coding gene
  • Location scaffold52_3862006 : 1439758-1458675 : positive

Gene Family Information

  • ID HOM05D000904
  • #Genes/#Species 662/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid SHI24519-RA

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IEA
InterPromRNA splicing, via spliceosome
GO:0048573
ISO
PLAZA Integrative Orthologyphotoperiodism, flowering AT5G42820

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046872
IEA
InterPrometal ion binding
GO:0003723
IEA
InterProRNA binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0046983
IEA
InterProprotein dimerization activity
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G42820

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0089701
IEA
InterProU2AF complex
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT5G42820
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT1G27650
GO:0005654
ISO
PLAZA Integrative Orthologynucleoplasm AT1G27650

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000571 Zinc finger, CCCH-type
IPR009145 U2 auxiliary factor small subunit
IPR000504 RNA recognition motif domain
IPR036638 Helix-loop-helix DNA-binding domain superfamily
IPR011598 Myc-type, basic helix-loop-helix (bHLH) domain
IPR003954 RNA recognition motif domain, eukaryote
IPR035979 RNA-binding domain superfamily
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
Mapman id Description
15.5.30 RNA biosynthesis.transcriptional regulation.transcription factor (bHLH)
16.2.1.2.11.1 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).U2AF pre-RNA splicing auxiliary factor heterodimer.small subunit U2AF1/U2AF35