Gene: SGA_v2.0_scaffold88G27203

General Information

Structural Information

  • Species Striga asiatica
  • Gene Identifier SGA_v2.0_scaffold88G27203
  • Transcript Identifier SGA_v2.0_scaffold88T27203
  • Gene Type Coding gene
  • Location scaffold88 : 222625-229042 : negative

Gene Family Information

  • ID HOM05D001257
  • #Genes/#Species 497/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

Descriptions

  • product RNA polymerase sigma factor rpoD, putative
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006352
IEA
InterProDNA-templated transcription, initiation
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0071482
ISO
PLAZA Integrative Orthologycellular response to light stimulus AT3G53920
GO:2001141
ISO
PLAZA Integrative Orthologyregulation of RNA biosynthetic process AT3G53920

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003700
IEA
InterProDNA-binding transcription factor activity
GO:0016987
ISO
PLAZA Integrative Orthologysigma factor activity AT3G53920
GO:0003899
ISO
PLAZA Integrative OrthologyDNA-directed 5'-3' RNA polymerase activity AT3G53920
GO:0000976
ISO
PLAZA Integrative Orthologytranscription cis-regulatory region binding AT3G53920

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT3G53920

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR014284 RNA polymerase sigma-70 like domain
IPR007627 RNA polymerase sigma-70 region 2
IPR013324 RNA polymerase sigma factor, region 3/4-like
IPR007624 RNA polymerase sigma-70 region 3
IPR013325 RNA polymerase sigma factor, region 2
Mapman id Description
15.6.2.1 RNA biosynthesis.organelle machinery.transcriptional regulation.basal transcription factor (Sigma)