Gene: SGA_v2.0_scaffold18G08520

General Information

Structural Information

  • Species Striga asiatica
  • Gene Identifier SGA_v2.0_scaffold18G08520
  • Transcript Identifier SGA_v2.0_scaffold18T08520
  • Gene Type Coding gene
  • Location scaffold18 : 2826565-2828766 : positive

Gene Family Information

  • ID HOM05D000001
  • #Genes/#Species 35287/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

Descriptions

  • product Pentatricopeptide repeat-containing family protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009451
ISO
PLAZA Integrative OrthologyRNA modification AT5G48910
GO:1900865
ISO
PLAZA Integrative Orthologychloroplast RNA modification AT4G37380
GO:0031425
ISO
PLAZA Integrative Orthologychloroplast RNA processing AT2G29760
GO:0016554
ISO
PLAZA Integrative Orthologycytidine to uridine editing AT5G66520
GO:0016556
ISO
PLAZA Integrative OrthologymRNA modification AT1G59720

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0008270
IEA
InterProzinc ion binding
GO:0004519
ISO
PLAZA Integrative Orthologyendonuclease activity AT1G59720
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT2G29760

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT2G29760

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011990 Tetratricopeptide-like helical domain superfamily
IPR002885 Pentatricopeptide repeat
IPR032867 DYW domain
Mapman id Description
16.11.3.3.4.48 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.PPR-type RNA editing factor activities.RNA editing factor (OTP81)