Gene: SGA_v2.0_scaffold136G35006

General Information

Structural Information

Species Striga asiatica
Gene Identifier SGA_v2.0_scaffold136G35006
Transcript Identifier SGA_v2.0_scaffold136T35006
Gene Type Coding gene
Location scaffold136 : 457590-459926 : negative

Gene Family Information

Homologous GF
Orthologous GF

ID HOM05D003145
#Genes/#Species 218/99
Phylogenetic origin

ID ORTHO05D003586
#Genes/#Species 214/99
Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

Descriptions

Short descriptions
Ortholog descriptions

product splicing factor-related

Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0008380	ISO	PLAZA Integrative Orthology	RNA splicing	AT5G51300
GO:0009737	ISO	PLAZA Integrative Orthology	response to abscisic acid	AT5G51300

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003723	IEA	InterPro	RNA binding
GO:0003676	IEA	InterPro	nucleic acid binding
GO:0008270	IEA	InterPro	zinc ion binding
GO:0005515	ISO	PLAZA Integrative Orthology	protein binding	AT5G51300

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005634	ISO	PLAZA Integrative Orthology	nucleus	AT5G51300
GO:0005730	ISO	PLAZA Integrative Orthology	nucleolus	AT5G51300
GO:0005654	ISO	PLAZA Integrative Orthology	nucleoplasm	AT5G51300

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR036612	K Homology domain, type 1 superfamily
IPR004087	K Homology domain
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily
IPR045071	KH domain-containing BBP-like
IPR004088	K Homology domain, type 1
IPR000504	RNA recognition motif domain
IPR032570	Splicing factor 1, helix-hairpin domain
IPR036875	Zinc finger, CCHC-type superfamily
IPR035979	RNA-binding domain superfamily
IPR001878	Zinc finger, CCHC-type

Mapman id	Description
16.2.1.2.9	RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).pre-mRNA splicing factor (SF1)