Gene: Pp3c23_3450

General Information

Structural Information

  • Species Physcomitrium patens
  • Gene Identifier Pp3c23_3450
  • Transcript Identifier Pp3c23_3450V3.2
  • Gene Type Coding gene
  • Location Chr23 : 2310579-2322897 : positive

Gene Family Information

  • ID HOM05D000399
  • #Genes/#Species 1254/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • name Pp3c23_3450V3.2
  • pacid 32950803
  • alias Pp1s82_160V6
  • alias Phpat.023G009200
  • uniprot A0A2K1II04

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0030422
IBA
GOA Databaseproduction of siRNA involved in RNA interference
GO:0006396
IEA
GOA DatabaseRNA processing
GO:0006396
IEA
InterProRNA processing
GO:0051214
ISO
PLAZA Integrative OrthologyRNAi-mediated antiviral immunity against RNA virus AT3G43920
GO:0035196
ISO
PLAZA Integrative Orthologyproduction of miRNAs involved in gene silencing by miRNA AT3G43920
GO:0051607
ISO
PLAZA Integrative Orthologydefense response to virus AT3G43920
GO:0010216
ISO
PLAZA Integrative Orthologymaintenance of DNA methylation AT3G43920
GO:0010267
ISO
PLAZA Integrative Orthologyproduction of ta-siRNAs involved in RNA interference AT3G43920
GO:0090305
IEA
GOA Databasenucleic acid phosphodiester bond hydrolysis
GO:0090501
IEA
GOA DatabaseRNA phosphodiester bond hydrolysis
GO:0090502
IEA
GOA DatabaseRNA phosphodiester bond hydrolysis, endonucleolytic
GO:0031047
IEA
GOA Databasegene silencing by RNA

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004525
IBA
IEA
GOA Databaseribonuclease III activity
GO:0004525
IEA
InterProribonuclease III activity
GO:0016891
IEA
GOA Databaseendoribonuclease activity, producing 5'-phosphomonoesters
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0016787
IEA
InterProhydrolase activity
GO:0003723
IBA
IEA
GOA DatabaseRNA binding
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0003725
ISO
PLAZA Integrative Orthologydouble-stranded RNA binding AT3G43920
GO:0005515
IEA
InterProprotein binding
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0004519
IEA
GOA Databaseendonuclease activity
GO:0004518
IEA
GOA Databasenuclease activity
GO:0004386
IEA
GOA Databasehelicase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IBA
GOA Databasecytoplasm
GO:0005634
IBA
GOA Databasenucleus
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT3G43920

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000999 Ribonuclease III domain
IPR038248 Dicer dimerisation domain superfamily
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR036389 Ribonuclease III, endonuclease domain superfamily
IPR003100 PAZ domain
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR014720 Double-stranded RNA-binding domain
IPR006935 Helicase/UvrB, N-terminal
IPR001650 Helicase, C-terminal
IPR036085 PAZ domain superfamily
Mapman id Description
12.5.1.8 Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.endoribonuclease (DCL3)