Gene: Pp3c1_36560
General Information
Structural Information
- Species Physcomitrium patens
- Gene Identifier Pp3c1_36560
- Transcript Identifier Pp3c1_36560V3.1
- Gene Type Coding gene
- Location Chr01 : 25448516-25451566 : positive
Gene Family Information
- ID HOM05D001257
- #Genes/#Species 497/99
- Phylogenetic origin
- ID ORTHO05D005285
- #Genes/#Species 160/98
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- name Pp3c1_36560V3.1
- pacid 32966610
- alias Pp1s28_86V6
- alias Phpat.001G148300
- uniprot A0A2K1LB70
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0010114 | ISO | PLAZA Integrative Orthology | response to red light | AT1G08540 |
| GO:0009658 | ISO | PLAZA Integrative Orthology | chloroplast organization | AT1G08540 |
| GO:0009637 | ISO | PLAZA Integrative Orthology | response to blue light | AT1G08540 |
| GO:0006399 | ISO | PLAZA Integrative Orthology | tRNA metabolic process | AT1G08540 |
| GO:2001141 | ISO | PLAZA Integrative Orthology | regulation of RNA biosynthetic process | AT1G08540 |
| GO:0071482 | ISO | PLAZA Integrative Orthology | cellular response to light stimulus | AT1G08540 |
| GO:0006355 | IEA | GOA Database | regulation of transcription, DNA-templated | |
| GO:0006355 | IEA | InterPro | regulation of transcription, DNA-templated | |
| GO:0006352 | IEA | GOA Database | DNA-templated transcription, initiation | |
| GO:0006352 | IEA | InterPro | DNA-templated transcription, initiation | |
| GO:2000142 | IEA | GOA Database | regulation of DNA-templated transcription, initiation |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003700 | IEA | GOA Database | DNA-binding transcription factor activity | |
| GO:0003700 | IEA | InterPro | DNA-binding transcription factor activity | |
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0016987 | IEA | GOA Database | sigma factor activity | |
| GO:0016987 | IEA | InterPro | sigma factor activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009536 | IEA | GOA Database | plastid | |
| GO:0009507 | IEA | GOA Database | chloroplast |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR016262 | RNA polymerase sigma factor, SigB/C/D/F, plastid |
| IPR013324 | RNA polymerase sigma factor, region 3/4-like |
| IPR036388 | Winged helix-like DNA-binding domain superfamily |
| IPR000943 | RNA polymerase sigma-70 |
| IPR014284 | RNA polymerase sigma-70 like domain |
| IPR007627 | RNA polymerase sigma-70 region 2 |
| IPR007630 | RNA polymerase sigma-70 region 4 |
| IPR009042 | RNA polymerase sigma-70 region 1.2 |
| IPR007624 | RNA polymerase sigma-70 region 3 |
| IPR013325 | RNA polymerase sigma factor, region 2 |
| Mapman id | Description |
|---|---|
| 15.6.2.1 | RNA biosynthesis.organelle machinery.transcriptional regulation.basal transcription factor (Sigma) |