Gene: Pp3c17_2200
General Information
Structural Information
- Species Physcomitrium patens
- Gene Identifier Pp3c17_2200
- Transcript Identifier Pp3c17_2200V3.5
- Gene Type Coding gene
- Location Chr17 : 1632792-1635173 : positive
Gene Family Information
- ID HOM05D000611
- #Genes/#Species 929/97
- Phylogenetic origin
- ID ORTHO05D007148
- #Genes/#Species 134/95
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- name Pp3c17_2200V3.5
- pacid 32906206
- alias Phpat.017G008100
- alias Phypa_34761
- alias Pp1s344_1V6
- uniprot A0A2K1J2H2
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0010267 | ISO | PLAZA Integrative Orthology | production of ta-siRNAs involved in RNA interference | AT1G09700 |
| GO:0035279 | ISO | PLAZA Integrative Orthology | mRNA cleavage involved in gene silencing by miRNA | AT1G09700 |
| GO:0010305 | ISO | PLAZA Integrative Orthology | leaf vascular tissue pattern formation | AT1G09700 |
| GO:0010589 | ISO | PLAZA Integrative Orthology | leaf proximal/distal pattern formation | AT1G09700 |
| GO:0009737 | ISO | PLAZA Integrative Orthology | response to abscisic acid | AT1G09700 |
| GO:0009733 | ISO | PLAZA Integrative Orthology | response to auxin | AT1G09700 |
| GO:0009735 | ISO | PLAZA Integrative Orthology | response to cytokinin | AT1G09700 |
| GO:0035196 | ISO | PLAZA Integrative Orthology | production of miRNAs involved in gene silencing by miRNA | AT1G09700 |
| GO:0031054 | ISO | PLAZA Integrative Orthology | pre-miRNA processing | AT1G09700 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003725 | ISO | PLAZA Integrative Orthology | double-stranded RNA binding | AT1G09700 |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT1G09700 |
| GO:0003723 | IEA | GOA Database | RNA binding | |
| GO:0042802 | ISO | PLAZA Integrative Orthology | identical protein binding | AT1G09700 |
| GO:0035198 | ISO | PLAZA Integrative Orthology | miRNA binding | AT1G09700 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT1G09700 |
| GO:0010445 | ISO | PLAZA Integrative Orthology | nuclear dicing body | AT1G09700 |
| GO:0015030 | ISO | PLAZA Integrative Orthology | Cajal body | AT1G09700 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR014720 | Double-stranded RNA-binding domain |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |