Gene: Pp3c12_23410

General Information

Structural Information

  • Species Physcomitrium patens
  • Gene Identifier Pp3c12_23410
  • Transcript Identifier Pp3c12_23410V3.2
  • Gene Type Coding gene
  • Location Chr12 : 15424542-15425868 : negative

Gene Family Information

  • ID HOM05D000142
  • #Genes/#Species 2580/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • name Pp3c12_23410V3.2
  • pacid 32972612
  • alias Phpat.012G082800
  • alias Phypa_37849
  • alias Pp1s118_101V6
  • uniprot A0A2K1JS34

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009631
ISO
PLAZA Integrative Orthologycold acclimation AT4G13850
GO:0016554
ISO
PLAZA Integrative Orthologycytidine to uridine editing AT1G73530
GO:0009409
ISO
PLAZA Integrative Orthologyresponse to cold AT5G61030
GO:0009414
ISO
PLAZA Integrative Orthologyresponse to water deprivation AT4G13850
GO:0060567
ISO
PLAZA Integrative Orthologynegative regulation of DNA-templated transcription, termination AT4G13850
GO:1900864
ISO
PLAZA Integrative Orthologymitochondrial RNA modification AT3G23830
GO:0009845
ISO
PLAZA Integrative Orthologyseed germination AT4G13850
GO:1900871
ISO
PLAZA Integrative Orthologychloroplast mRNA modification AT1G73530
GO:0006970
ISO
PLAZA Integrative Orthologyresponse to osmotic stress AT4G13850
GO:0080156
ISO
PLAZA Integrative Orthologymitochondrial mRNA modification AT5G61030
GO:1901002
ISO
PLAZA Integrative Orthologypositive regulation of response to salt stress AT5G06210
GO:0009651
ISO
PLAZA Integrative Orthologyresponse to salt stress AT1G18630

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0034336
ISO
PLAZA Integrative Orthologymisfolded RNA binding AT4G13850
GO:0005507
ISO
PLAZA Integrative Orthologycopper ion binding AT5G61030
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G73530
GO:0005524
ISO
PLAZA Integrative OrthologyATP binding AT5G61030
GO:0003697
ISO
PLAZA Integrative Orthologysingle-stranded DNA binding AT5G61030
GO:0043621
ISO
PLAZA Integrative Orthologyprotein self-association AT1G74230
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003690
ISO
PLAZA Integrative Orthologydouble-stranded DNA binding AT4G13850
GO:0042803
ISO
PLAZA Integrative Orthologyprotein homodimerization activity AT1G74230
GO:0003729
IBA
GOA DatabasemRNA binding
GO:0003723
IEA
GOA DatabaseRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005768
ISO
PLAZA Integrative Orthologyendosome AT1G18630
GO:0005802
ISO
PLAZA Integrative Orthologytrans-Golgi network AT1G18630
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT1G73530
GO:0005794
ISO
PLAZA Integrative OrthologyGolgi apparatus AT1G18630
GO:0005739
IBA
GOA Databasemitochondrion
GO:0016020
IEA
GOA Databasemembrane
GO:0016021
IEA
GOA Databaseintegral component of membrane

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000504 RNA recognition motif domain
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 RNA-binding domain superfamily
Mapman id Description
16.11.3.3.2 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.RNA editing factor (ORRM)