Gene: Pp3c11_21000
General Information
Structural Information
- Species Physcomitrium patens
- Gene Identifier Pp3c11_21000
- Transcript Identifier Pp3c11_21000V3.3
- Gene Type Coding gene
- Location Chr11 : 14031079-14033554 : positive
Gene Family Information
- ID HOM05D000319
- #Genes/#Species 1449/100
- Phylogenetic origin
- ID ORTHO05D002646
- #Genes/#Species 273/100
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- name Pp3c11_21000V3.3
- pacid 32956328
- alias Phpat.011G078200
- alias Phypa_105274
- alias Pp1s31_336V6
- uniprot A9RVN5
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006511 | IEA | GOA Database | ubiquitin-dependent protein catabolic process | |
| GO:0006511 | IEA | InterPro | ubiquitin-dependent protein catabolic process | |
| GO:0016567 | IBA | GOA Database | protein ubiquitination | |
| GO:0009639 | ISO | PLAZA Integrative Orthology | response to red or far red light | AT1G26830 |
| GO:0009793 | ISO | PLAZA Integrative Orthology | embryo development ending in seed dormancy | AT1G26830 |
| GO:0009960 | ISO | PLAZA Integrative Orthology | endosperm development | AT1G26830 |
| GO:0009911 | ISO | PLAZA Integrative Orthology | positive regulation of flower development | AT1G26830 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0031625 | IBA IEA | GOA Database | ubiquitin protein ligase binding | |
| GO:0031625 | IEA | InterPro | ubiquitin protein ligase binding | |
| GO:0004842 | IBA | GOA Database | ubiquitin-protein transferase activity | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT1G26830 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0031461 | IBA | GOA Database | cullin-RING ubiquitin ligase complex | |
| GO:0000151 | ISO | PLAZA Integrative Orthology | ubiquitin ligase complex | AT1G26830 |
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT1G26830 |
| GO:0019005 | ISO | PLAZA Integrative Orthology | SCF ubiquitin ligase complex | AT1G26830 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR019559 | Cullin protein, neddylation domain |
| IPR036390 | Winged helix DNA-binding domain superfamily |
| IPR016159 | Cullin repeat-like-containing domain superfamily |
| IPR016158 | Cullin homology domain |
| IPR036317 | Cullin homology domain superfamily |
| IPR001373 | Cullin, N-terminal |
| IPR045093 | Cullin |
| IPR036388 | Winged helix-like DNA-binding domain superfamily |
| Mapman id | Description |
|---|---|
| 19.2.2.8.2.1 | Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.Cullin-based ubiquitylation complexes.CUL3-BTB E3 ubiquitin ligase complexes.scaffold component CUL3 |