Gene: Potri.018G092400

General Information

Structural Information

Species Populus trichocarpa
Gene Identifier Potri.018G092400
Transcript Identifier Potri.018G092400.1
Gene Type Coding gene
Location Chr18 : 11316752-11318575 : negative

Gene Family Information

Homologous GF
Orthologous GF

ID HOM05D000001
#Genes/#Species 35287/100
Phylogenetic origin

ID ORTHO05D000003
#Genes/#Species 15137/100
Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

id Potri.018G092400.v4.1
pacid 42801359
synonym POPTR_0018s10010

Descriptions

Short descriptions
Ortholog descriptions

Description PF01535//PF13812//PF14432 - PPR repeat (PPR) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase)

Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0016556	ISO	PLAZA Integrative Orthology	mRNA modification	AT1G59720

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005515	IEA	InterPro	protein binding
GO:0008270	IEA	InterPro	zinc ion binding
GO:0004519	ISO	PLAZA Integrative Orthology	endonuclease activity	AT1G59720

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0009507	ISO	PLAZA Integrative Orthology	chloroplast	AT1G59720

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR002885	Pentatricopeptide repeat
IPR011990	Tetratricopeptide-like helical domain superfamily
IPR032867	DYW domain

Mapman id	Description
16.11.3.3.4.46	RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.PPR-type RNA editing factor activities.RNA editing factor (CRR28)