Gene: Potri.012G061600

General Information

Structural Information

  • Species Populus trichocarpa
  • Gene Identifier Potri.012G061600
  • Transcript Identifier Potri.012G061600.1
  • Gene Type Coding gene
  • Location Chr12 : 6362433-6363735 : negative

Gene Family Information

  • ID HOM05D000142
  • #Genes/#Species 2580/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Potri.012G061600.v4.1
  • pacid 42782862
  • synonym POPTR_0012s05870

Descriptions

  • Description K12741 - heterogeneous nuclear ribonucleoprotein A1/A3 (HNRNPA1_3)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009409
ISO
PLAZA Integrative Orthologyresponse to cold AT5G61030
GO:0080156
ISO
PLAZA Integrative Orthologymitochondrial mRNA modification AT5G61030
GO:0016554
ISO
PLAZA Integrative Orthologycytidine to uridine editing AT5G61030

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0005524
ISO
PLAZA Integrative OrthologyATP binding AT5G61030
GO:0003723
ISO
PLAZA Integrative OrthologyRNA binding AT5G61030
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G61030
GO:0042803
ISO
PLAZA Integrative Orthologyprotein homodimerization activity AT1G74230
GO:0005507
ISO
PLAZA Integrative Orthologycopper ion binding AT5G61030
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT5G61030
GO:0043621
ISO
PLAZA Integrative Orthologyprotein self-association AT1G74230
GO:0003697
ISO
PLAZA Integrative Orthologysingle-stranded DNA binding AT5G61030

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005739
ISO
PLAZA Integrative Orthologymitochondrion AT5G61030

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR035979 RNA-binding domain superfamily
IPR000504 RNA recognition motif domain
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
Mapman id Description
16.11.3.3.2 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.RNA editing factor (ORRM)