Gene: Potri.005G089600
General Information
Structural Information
- Species Populus trichocarpa
- Gene Identifier Potri.005G089600
- Transcript Identifier Potri.005G089600.4
- Gene Type Coding gene
- Location Chr05 : 6234179-6236839 : negative
Gene Family Information
- ID HOM05D002348
- #Genes/#Species 289/96
- Phylogenetic origin
- ID ORTHO05D002512
- #Genes/#Species 283/96
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- id Potri.005G089600.v4.1
- pacid 42803029
- synonym POPTR_0005s09190
Descriptions
- Description PTHR11404//PTHR11404:SF17 - SUPEROXIDE DISMUTASE 2 // SUPEROXIDE DISMUTASE [FE] 3, CHLOROPLASTIC
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006801 | IEA | InterPro | superoxide metabolic process | |
| GO:0019430 | ISO | PLAZA Integrative Orthology | removal of superoxide radicals | AT5G23310 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0004784 | IEA | InterPro | superoxide dismutase activity | |
| GO:0046872 | IEA | InterPro | metal ion binding | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT5G23310 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0042646 | ISO | PLAZA Integrative Orthology | plastid nucleoid | AT5G23310 |
| GO:0009507 | ISO | PLAZA Integrative Orthology | chloroplast | AT5G23310 |
| GO:0042644 | ISO | PLAZA Integrative Orthology | chloroplast nucleoid | AT5G23310 |
| GO:0009579 | ISO | PLAZA Integrative Orthology | thylakoid | AT5G23310 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR019831 | Manganese/iron superoxide dismutase, N-terminal |
| IPR036324 | Manganese/iron superoxide dismutase, N-terminal domain superfamily |
| IPR001189 | Manganese/iron superoxide dismutase |
| IPR036314 | Manganese/iron superoxide dismutase, C-terminal domain superfamily |
| IPR019832 | Manganese/iron superoxide dismutase, C-terminal |
| Mapman id | Description |
|---|---|
| 10.2.1.1 | Redox homeostasis.enzymatic reactive oxygen scavenging.superoxide dismutase activities.iron superoxide dismutase (FSD) |
| 15.6.1.2.2.4 | RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essential co-factor components.component PAP4/FSD3 |